rs2168761 chr12:52279102 C>T
- Sequence
ctccgttcagccgggctccgcctg[C/T]ctgctccagccccgagcaggctcc
- ASB in cell types
- THP-1 (acute monocytic leukemia) SYO-1(Biphasic synovial sarcoma) IMR-5 (Neuroblastoma) SEM (childhood B acute lymphoblastic leukemia)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN BRD2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.73 | 1.70 | 1.33 | -2.12 | Discordant | |||
| RAD21_HUMAN | 0.18 | 2.17 | 1.17 | n/a | n/a | |||
| BRD2_HUMAN | n/a | 2.38 | 1.50 | n/a | n/a |
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Motif analysis
