rs217111 chr11:88297617 G>A
- Sequence
ttaaactcccattatctgaccatc[G/A]atcactgtgggaggcacaggctgc
- ASB in cell types
- HEK293 (embryonic kidney) iPS-derived chondrocytes
- ASB for transcription factors
- GLIS1_HUMAN RARA_HUMAN PKNX1_HUMAN PDX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GLIS1_HUMAN | n/a | 1.77 | 1.33 | n/a | n/a | |||
| RARA_HUMAN | -0.26 | 1.67 | 1.82 | n/a | No Hit | |||
| PKNX1_HUMAN | -1.17 | 1.71 | 2.00 | n/a | No Hit | |||
| PDX1_HUMAN | -1.08 | 1.30 | 1.00 | 5.91 | Concordant |
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Motif analysis
