rs2172623 chr16:84820016 T>C
- Sequence
tcccagggcgtctccggctgctcc[T/C]attgagctgtctgctcgctgtgcc
- ASB in cell types
- CD14+ monocytes HEK293 (embryonic kidney)
- ASB for transcription factors
- STAT1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | n/a | 3.04 | 3.00 | n/a | No Hit | |||
| ANDR_HUMAN | -0.75 | 2.23 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg