rs217358 chr7:44582687 G>A

Sequence
gccctgtgatgttttgctttgcgt[G/A]tccacctatctgactcgtaagaac
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) MOLT-4 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
FOXK2_HUMAN STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN 2.56 -2.18 7.5·10-31.00 1.00 n/a n/a
STAG1_HUMAN 0.37 1.41 0.910.04 1.13 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI ldl cholesterol x physical activity interaction (2df test)
GRASP adiponectin levels,  coronary artery disease (cad),  coronary artery disease (cad), combined control dataset,  ldl cholesterol,  total cholesterol,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid,  Whole_Blood

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