rs217508 chr7:28477404 T>C
- Sequence
aggatccaggttctgggtttttcc[T/C]agcatatgatctacactcccctga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF1_HUMAN IKZF2_HUMAN SPI1_HUMAN RELB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -1.41 | 1.47 | 1.25 | 3.02 | Concordant | |||
| IKZF2_HUMAN | -2.91 | 1.52 | 1.50 | n/a | n/a | |||
| SPI1_HUMAN | -0.38 | 1.71 | 1.88 | n/a | No Hit | |||
| RELB_HUMAN | -2.52 | 2.62 | 1.00 | n/a | No Hit |
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Motif analysis
