rs2179110 chr1:11912754 C>T
- Sequence
tacgtcagcgttttcttctgtgca[C/T]ttatcagaaattcgatcaaagact
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- MITF_HUMAN ZN316_HUMAN RAD51_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MITF_HUMAN | 1.97 | 0.21 | 1.25 | n/a | No Hit | |||
| ZN316_HUMAN | 2.64 | -2.33 | 1.00 | n/a | n/a | |||
| RAD51_HUMAN | 1.61 | -1.25 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Spleen, Testis, Whole_Blood