rs2180183 chr1:11980422 T>C
- Sequence
cacttccctcctcccgcctccccc[T/C]ggggtggcgctcgctggtgacgta
- ASB in cell types
- GM02610 (Lymphoblastoid Cell Lines) thymus-derived CD34- cells
- ASB for transcription factors
- RBM25_HUMAN SPI1_HUMAN BRD2_HUMAN BC11B_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 0.24 | 2.20 | 2.00 | n/a | n/a | |||
| SPI1_HUMAN | 0.80 | 0.09 | 1.33 | n/a | No Hit | |||
| BRD2_HUMAN | 0.19 | 1.24 | 1.33 | n/a | n/a | |||
| BC11B_HUMAN | 1.42 | -0.21 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood