rs2180273 chr1:231207111 T>C
- Sequence
caccctgctctgcacacacagctc[T/C]ttgctgcacccacatggcctacaa
- ASB in cell types
- T47D (invasive ductal carcinoma)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN PRDM9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 2.02 | -0.42 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 2.03 | -0.03 | 1.80 | n/a | No Hit | |||
| PRDM9_HUMAN | -0.68 | 2.17 | 2.00 | n/a | n/a |
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