rs2190097 chr7:77409628 C>T
- Sequence
cagtgagtttgttcatcctgtaca[C/T]gactcaaaacttctggaatgcaat
- ASB in cell types
- HepG2 (hepatoblastoma) A549 (lung carcinoma) MCF10A (breast epithelial cells)
- ASB for transcription factors
- TEAD4_HUMAN EP300_HUMAN RXRB_HUMAN TBX3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TEAD4_HUMAN | 0.08 | 3.58 | 1.25 | n/a | No Hit | |||
| EP300_HUMAN | -0.08 | 3.27 | 1.75 | n/a | n/a | |||
| RXRB_HUMAN | -2.46 | 2.80 | 1.00 | n/a | No Hit | |||
| TBX3_HUMAN | -2.67 | 2.91 | 1.00 | n/a | No Hit | |||
| FOXA2_HUMAN | -0.03 | 1.38 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP barnes akathisia rating scale, bipolar disorder, ldl cholesterol, partial epilepsy, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood