rs2200050 chr4:85557508 T>C
- Sequence
ctgaggactctcacttactcactg[T/C]ttccccagtgtggtgactcccctg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) primary B-CLL cells
- ASB for transcription factors
- CTCF_HUMAN BRD4_HUMAN TBX21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.37 | 1.72 | 1.22 | 1.08 | Weak Concordant | |||
| BRD4_HUMAN | 3.38 | n/a | 3.00 | n/a | n/a | |||
| TBX21_HUMAN | 1.61 | -2.71 | 1.50 | 2.08 | Discordant |
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Motif analysis
