rs220524 chr20:38649464 A>T
- Sequence
ctgatccactaggtggctctagag[A/T]acaaatcacatcagagttgttgca
- ASB in cell types
- MS-1 (Small cell lung carcinoma) adrenal gland GM12892 (female B-cells lymphoblastoid cell line) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.64 | 1.00 | 1.52 | n/a | No Hit | |||
| STAG1_HUMAN | -0.71 | 0.94 | 1.10 | n/a | n/a | |||
| RAD21_HUMAN | 0.26 | 0.82 | 1.21 | n/a | n/a |
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