ADASTRA v5.1.3
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rs2208
chr3:72822622
C
>
T
Sequence
tcccacaccacctcattaaaatac[C/T]gtgctaaaattagggaaactgact
ASB in cell types
A549 (lung carcinoma)
adrenal gland
ASB for transcription factors
RAD21_HUMAN
SMC3_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD21_HUMAN
1.06
0.34
0.01
0.87
2.02
n/a
n/a
SMC3_HUMAN
1.42
0.37
0.03
0.87
2.00
n/a
n/a
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
autism
,
autism with high iq
,
bipolar disorder
GTEx eQTL
Adipose_Subcutaneous
,
Colon_Transverse
,
Esophagus_Mucosa
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Nerve_Tibial
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Testis
,
Thyroid
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)