rs2214043 chr12:110826680 G>A
- Sequence
cctgtgacctggggcatatcatgt[G/A]acctctctgaacctcagtttcctc
- ASB in cell types
- GBM39 (Human brain tumor) foreskin keratinocyte LNCaP (prostate carcinoma) gastroesophageal sphincter
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.12 | 0.31 | 1.32 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Thyroid