rs2223224 chr1:25820048 A>C

Sequence
cttgaggtgagaaaggttctaggg[A/C]ggcgcggaggcgggagcgcgacct
ASB in cell types
22RV1 (prostate carcinoma) breast tumor
ASB for transcription factors
ANDR_HUMAN ESR1_HUMAN INT11_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN -1.94 2.74 1.002.2·10-3 2.00 n/a No Hit
ESR1_HUMAN -0.30 1.95 1.000.04 1.50 n/a No Hit
INT11_HUMAN 1.77 -0.30 0.041.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hippocampus,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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