rs2230267 chr19:48965830 T>C
- Sequence
ggcgtgagccacttcttccgcgaa[T/C]tggccgaggagaagcgcgagggct
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney)
- ASB for transcription factors
- RFOX2_HUMAN FOXK2_HUMAN AGO2_HUMAN THA11_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFOX2_HUMAN | 2.77 | -0.80 | 1.75 | n/a | n/a | |||
| FOXK2_HUMAN | -0.18 | 3.19 | 1.62 | n/a | n/a | |||
| AGO2_HUMAN | 2.30 | -1.56 | 1.17 | n/a | n/a | |||
| THA11_HUMAN | 3.18 | -3.05 | 1.00 | n/a | No Hit | |||
| HDAC1_HUMAN | 2.03 | -3.52 | 2.00 | n/a | n/a |
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