rs2232813 chr1:171781437 T>C
- Sequence
ctcctcacccggacgtgacctagt[T/C]ctcacagaggcccggcctcttccg
- ASB in cell types
- neutrophils from periferal blood GM12878 (female B-cells lymphoblastoid cell line) monocytes from periferal blood
- ASB for transcription factors
- RAD21_HUMAN ANDR_HUMAN SRBP2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 2.59 | -0.23 | 1.50 | n/a | n/a | |||
| ANDR_HUMAN | 1.34 | -3.53 | 2.00 | n/a | No Hit | |||
| SRBP2_HUMAN | 1.92 | 0.02 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Esophagus_Mucosa, Heart_Atrial_Appendage, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood