rs223391 chr4:102827067 G>A
- Sequence
caaaggtgcggccgggaaaaggaa[G/A]gaaataaaggaagggagacttgat
- ASB in cell types
- breast tumor monocytes from periferal blood
- ASB for transcription factors
- ESR1_HUMAN SRBP2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.35 | -1.27 | 2.00 | n/a | No Hit | |||
| SRBP2_HUMAN | 1.74 | -4.87 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP autism, autism with high iq, bipolar disorder, body mass index (bmi), diastolic blood pressure (dbp), hdl cholesterol, ldl cholesterol change with statins, serum creatinine, total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood