rs2235954 chr20:2664329 C>T
- Sequence
ttgctcacgcctgtttctcctttt[C/T]cttgccggtggggaggtcatggga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) Kelly (neuroblastoma) breast tumor
- ASB for transcription factors
- FOXK2_HUMAN MYCN_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | -2.99 | 2.12 | 1.50 | n/a | n/a | |||
| MYCN_HUMAN | 2.39 | -2.06 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | -0.62 | 2.42 | 1.75 | n/a | No Hit |
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