rs2236167 chr14:35122520 T>C
- Sequence
gtccgggtcagtctcgtccgtcgg[T/C]cggggctggcgcggtgcatcgtgg
- ASB in cell types
- CD14+ monocytes MCF7 (Invasive ductal breast carcinoma) MDM(monocyte derived macrophages)
- ASB for transcription factors
- STAT1_HUMAN FOXK2_HUMAN ZN687_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.93 | -0.10 | 1.60 | n/a | No Hit | |||
| FOXK2_HUMAN | -0.18 | 1.90 | 1.75 | n/a | n/a | |||
| ZN687_HUMAN | -1.26 | 1.67 | 1.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood