rs2236295 chr10:62805132 G>T
- Sequence
gcttgcctcaccttccggggcagc[G/T]ggggcggccgcggcgcttccgatc
- ASB in cell types
- HepG2 (hepatoblastoma) primary B-CLL cells
- ASB for transcription factors
- TYY1_HUMAN BRD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 0.11 | 3.87 | 1.25 | n/a | No Hit | |||
| BRD4_HUMAN | 0.22 | 2.73 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
EMBL-EBI cardiovascular disease, medication use (agents acting on the renin-angiotensin system), urinary albumin excretion (no hypertensive medication), venlafaxine response in generalised anxiety disorder (remitters vs non-remitters after 12 weeks)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Testis, Thyroid