rs2236297 chr14:54691730 G>A
- Sequence
ggctggaggggaagcaggaaggga[G/A]gtgtgcctctagctccctctacag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line) GBM39 (Human brain tumor) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SPI1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.02 | 0.36 | 1.27 | n/a | No Hit | |||
| STAG1_HUMAN | 0.90 | -0.04 | 1.00 | n/a | n/a | |||
| SPI1_HUMAN | 0.20 | 1.60 | 1.68 | 0.13 | Weak Concordant | |||
| RAD21_HUMAN | 1.27 | -0.39 | 1.09 | n/a | n/a | |||
| SMCA4_HUMAN | 1.14 | 0.06 | 1.07 | n/a | n/a |
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Motif analysis
