rs2236604 chr1:226637640 G>A

Sequence
gaaggagaaggcctgttggcacgc[G/A]cagcattctgctcaagagggcaaa
ASB in cell types
GM12892 (female B-cells lymphoblastoid cell line)
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
GM12892 (female B-cells lymphoblastoid cell line) 2.59 -2.46 3.6·10-31.00 1.00
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Motif analysis

No data available

Genetic associations

GRASP alcohol consumption,  hypertension (early onset hypertension),  irritible bowel syndrome,  obesity with early age of onset (age >2),  refractive error,  resistance to kuru in aged women despite likely exposure,  schizophrenia
GTEx eQTL Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg

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