rs2237286 chr7:155805242 G>T
- Sequence
ggcccaggggccgccgccgagccc[G/T]cgaggtgggggcgccgcctcctgc
- ASB in cell types
- Peyer's patch upper lobe of left lung GM10847 (female B-cells Lymphoblastoid Cell Lines) THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- CTCF_HUMAN CDN1B_HUMAN JUN_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.07 | 2.20 | 1.53 | -1.41 | Weak Discordant | |||
| CDN1B_HUMAN | 0.17 | 1.52 | 2.00 | n/a | n/a | |||
| JUN_HUMAN | 0.26 | 0.83 | 2.00 | n/a | No Hit |
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Motif analysis
