rs223889 chr16:57358329 T>C

Sequence
caatgggtccataggcctctccca[T/C]tgaagagagaccagtaatgccgtc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF2_HUMAN -0.51 1.63 1.000.05 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI multiple sclerosis systemic lupus erythematosus
GRASP ldl cholesterol mitral annular calcium total cholesterol
GTEx eQTL Artery_Tibial Brain_Cerebellar_Hemisphere Brain_Cerebellum Nerve_Tibial Pituitary Testis Thyroid

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