rs2239912 chr9:133793369 C>T
- Sequence
tcttcagcaggttcccatccctcc[C/T]gcccttcctcgttcctagaagacc
- ASB in cell types
- neural cell foreskin keratinocyte HCT-116 (colon carcinoma) upper lobe of left lung
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAT1_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.10 | 1.74 | 1.45 | n/a | No Hit | |||
| RAD21_HUMAN | -0.04 | 1.48 | 1.50 | n/a | n/a | |||
| STAT1_HUMAN | -1.51 | 2.55 | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | 0.39 | 0.61 | 1.00 | n/a | n/a | |||
| SMC3_HUMAN | -1.31 | 1.31 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Stomach, Whole_Blood