rs224185 chr16:3153034 G>T
- Sequence
agagttagaatgcggtatactcca[G/T]tggaggtgcggagtttccgaaggg
- ASB in cell types
- K562 (myelogenous leukemia) MOLT-4 (Adult T acute lymphoblastic leukemia) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ZEB2_HUMAN SUMO2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZEB2_HUMAN | 1.66 | -4.14 | 2.00 | n/a | n/a | |||
| SUMO2_HUMAN | 1.60 | 0.41 | 1.89 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood