ADASTRA v5.1.3
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rs2242058
chr15:52379587
C
>
T
Sequence
ctttccaaggtcagaaccacaagg[C/T]cttctgctcagatgacggtaagcg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
FOXK2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN
n/a
2.88
1.00
0.02
2.00
n/a
n/a
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
hip bone mineral density (bmd)
,
spine bone mineral density (bmd)
,
sporadic creutzfeldt-jakob disease
,
suicide attempts in bipolar disorder (males)
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Tibial
,
Brain_Caudate_basal_ganglia
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Brain_Frontal_Cortex_BA9
,
Brain_Hippocampus
,
Brain_Nucleus_accumbens_basal_ganglia
,
Brain_Putamen_basal_ganglia
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Lung
,
Nerve_Tibial
,
Pancreas
,
Pituitary
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Testis
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)