rs2242452 chr10:11260296 G>C
- Sequence
atgtgtgcttgatttctgctcccc[G/C]tctgctggcctggctgatctaggc
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM19193 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.21 | 2.19 | 1.72 | 2.97 | Concordant |
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Motif analysis
