rs2246249 chr1:16624288 T>A
- Sequence
aggccttactgcaggtgtgtggcc[T/A]cctctgacacggtcctgccttcac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) breast tumor HepG2 (hepatoblastoma) hTERT-HME1(Telomerase immortalized cell line)
- ASB for transcription factors
- ESR1_HUMAN BRCA2_HUMAN ANDR_HUMAN AGO2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.01 | 0.50 | 3.04 | n/a | No Hit | |||
| BRCA2_HUMAN | 3.43 | -3.22 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 1.96 | -0.62 | 1.88 | n/a | No Hit | |||
| AGO2_HUMAN | 2.12 | -0.18 | 1.33 | n/a | n/a | |||
| PAX2_HUMAN | 2.08 | -4.18 | 2.00 | n/a | n/a |
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