rs2248029 chr3:112991395 T>C
- Sequence
gcgtcacagcgctaaccgcttccc[T/C]ggccgtccggctcgcgggtgattt
- ASB in cell types
- keratinocytes MCF7 (Invasive ductal breast carcinoma) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- SNAI2_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | -4.57 | 3.37 | 1.50 | n/a | No Hit | |||
| CREB1_HUMAN | 1.23 | 0.17 | 1.13 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Spleen, Testis, Thyroid, Whole_Blood