rs2248767 chr8:100165538 C>T

Sequence
cgcggagcaaccccacttcctcca[C/T]ggtgccggggaccacaccgcccca
ASB in cell types
J-Lat A72 CTV-1 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
SMCA4_HUMAN SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMCA4_HUMAN 2.55 -1.00 1.7·10-61.00 1.00 n/a n/a
SPI1_HUMAN 2.95 n/a 1.8·10-31.00 1.00 1.54 Weak Discordant
Items per page:
1 – 2 of 2

Motif analysis

SPI1_HUMAN Weak Discordant
SPI1_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  birth weight,  hdl cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Coronary,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

Download