rs2248931 chr10:43420581 C>G
- Sequence
cttccagcgctgccggcggcgggg[C/G]gggtgccgggcgcgcctgctgcgc
- ASB in cell types
- HCT-116 (colon carcinoma) GM12878 (female B-cells lymphoblastoid cell line) MOLM14 (Adult acute myeloid leukemia) primary B-CLL cells
- ASB for transcription factors
- ZFX_HUMAN LDB1_HUMAN CDK8_HUMAN GCR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 3.03 | -2.62 | 1.00 | n/a | No Hit | |||
| LDB1_HUMAN | -0.72 | 2.48 | 2.00 | n/a | n/a | |||
| CDK8_HUMAN | 0.31 | 1.52 | 2.00 | n/a | n/a | |||
| GCR_HUMAN | 0.32 | 0.84 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid