rs2250986 chr8:11564780 G>C

Sequence
gggcccgcgccgggagctctgggc[G/C]gggaaaagccaggggctgacgctg
ASB in cell types
GM02610 (Lymphoblastoid Cell Lines) HEK293 (embryonic kidney) MS-1 (Small cell lung carcinoma) GM02630 (Fanconi anemi)
ASB for transcription factors
NRF1_HUMAN STAG1_HUMAN IKZF3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NRF1_HUMAN n/a 3.42 1.003.1·10-6 2.00 n/a No Hit
STAG1_HUMAN 1.14 0.35 2.0·10-51.00 1.32 n/a n/a
IKZF3_HUMAN n/a 2.68 1.006.1·10-5 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP body mass index (bmi),  ldl cholesterol change with statins,  serum creatinine,  total cholesterol,  total cholesterol change with statins,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Hippocampus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

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