rs225115 chr1:7954388 C>T

Sequence
ggtggcccacgctgggggggggct[C/T]ttcacactggtgggcgcagaggcg
ASB in cell types
K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
MNT_HUMAN HDAC1_HUMAN FOXK2_HUMAN NR4A1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MNT_HUMAN -0.52 2.07 1.001.3·10-4 1.20 n/a n/a
HDAC1_HUMAN 0.05 2.64 1.007.8·10-4 1.00 n/a n/a
FOXK2_HUMAN 2.52 0.74 0.011.00 1.00 n/a n/a
NR4A1_HUMAN n/a 2.67 1.000.04 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cortex,  Brain_Spinal_cord_cervical_c-1,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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