rs2252000 chr12:103859245 G>A

Sequence
atcaaggctggccgggcagtactc[G/A]gtgtcttgtgatttggggtggggc
ASB in cell types
K562 (myelogenous leukemia) HEK293 (embryonic kidney)
ASB for transcription factors
ZBT17_HUMAN ESR1_HUMAN AFF1_HUMAN KDM1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZBT17_HUMAN 2.53 n/a 0.021.00 2.00 n/a No Hit
ESR1_HUMAN 1.54 -4.03 0.031.00 2.00 n/a No Hit
AFF1_HUMAN n/a 2.48 1.000.03 2.00 n/a n/a
KDM1A_HUMAN -1.05 2.11 1.000.04 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  advanced age-related macular degeneration (geographic atrophy)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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