rs225430 chr21:42381603 C>A
- Sequence
ctggcctcaagaagctctttctgc[C/A]tccaggtggcaccaacagggagaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM12892 (female B-cells lymphoblastoid cell line) epithelial cell of prostate GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN REST_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.82 | -0.25 | 1.45 | -7.26 | Concordant | |||
| STAG1_HUMAN | 2.11 | -2.46 | 1.33 | n/a | n/a | |||
| RAD21_HUMAN | 1.81 | 0.64 | 1.48 | n/a | n/a | |||
| REST_HUMAN | 2.51 | -2.21 | 1.00 | n/a | No Hit |
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Motif analysis
