rs2255381 chr10:68163778 C>T
- Sequence
gcaaatggtcaggatctagtgcta[C/T]gtgacttttagtgacaaaggaagt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ARNT_HUMAN ZN687_HUMAN RAD51_HUMAN COT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARNT_HUMAN | 2.81 | -2.61 | 1.00 | -6.76 | Concordant | |||
| ZN687_HUMAN | 2.49 | -2.14 | 1.00 | n/a | n/a | |||
| RAD51_HUMAN | 2.54 | -2.58 | 1.00 | n/a | n/a | |||
| COT1_HUMAN | 2.27 | -1.79 | 1.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 1.25 | -0.29 | 1.00 | n/a | No Hit |
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Motif analysis
