rs226238 chr17:38865197 A>G

Sequence
tttttttttttaagatggagtctt[A/G]ctctgtcacccaggctggagtgca
ASB in cell types
LNCaP C4-2B (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.34 -0.08 0.020.92 1.25 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous Artery_Aorta Artery_Tibial Brain_Cerebellum Cells_Cultured_fibroblasts Esophagus_Mucosa Heart_Atrial_Appendage Lung Nerve_Tibial Pancreas Pituitary Prostate Testis Thyroid Whole_Blood

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