rs2270818 chr5:157731431 C>A

Sequence
ggggctatctggccctttcctttc[C/A]gcgtgtagaatgtggggcgcctgt
ASB in cell types
22RV1 (prostate carcinoma) CD14+ monocytes Th1-cells
ASB for transcription factors
NR2C1_HUMAN ANDR_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NR2C1_HUMAN 1.75 -1.75 4.8·10-61.00 1.00 n/a No Hit
ANDR_HUMAN 3.02 -4.84 1.5·10-41.00 2.00 n/a No Hit
STAT1_HUMAN 2.06 0.82 1.0·10-31.00 1.75 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  salmonella-induced pyroptosis,  total cholesterol,  triglycerides
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Pituitary,  Small_Intestine_Terminal_Ileum

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