rs2270819 chr5:157731406 C>A
- Sequence
gccgcgaagagaacacttccgggg[C/A]ggggctatctggccctttcctttc
- ASB in cell types
- primary B-CLL cells 22RV1 (prostate carcinoma) CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- NR2C1_HUMAN ANDR_HUMAN STAT1_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NR2C1_HUMAN | 1.47 | -1.47 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.95 | -4.13 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.55 | 0.59 | 1.75 | 4.29 | Discordant | |||
| BRD4_HUMAN | 3.51 | 0.98 | 1.33 | n/a | n/a | |||
| ESR1_HUMAN | 2.37 | -4.84 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Pituitary, Small_Intestine_Terminal_Ileum