rs2270821 chr5:157731318 G>C

Sequence
ggaacctaaacctccatcctcttt[G/C]cctgggaggttaagaactacaggg
ASB in cell types
Th1-cells GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
TBX21_HUMAN NR2C1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TBX21_HUMAN 2.00 0.38 2.2·10-31.00 1.00 n/a No Hit
NR2C1_HUMAN 1.51 -1.51 4.1·10-31.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  aortic valve calcium,  serum creatinine
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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