rs2271883 chr19:18204107 G>T
- Sequence
cgccatccggaggcggagccgcgc[G/T]tagagatgtggcccattgacgcac
- ASB in cell types
- esophagus muscularis mucosa K562 (myelogenous leukemia) sigmoid colon 22RV1 (prostate carcinoma)
- ASB for transcription factors
- EP300_HUMAN VEZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | 2.57 | 0.57 | 1.19 | n/a | n/a | |||
| VEZF1_HUMAN | -0.61 | 1.88 | 2.00 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Stomach, Testis