rs2273533 chr20:49046277 G>A

Sequence
tcctggccccgccccctgcagcgg[G/A]ccgctcgctcatgcgctctggcct
ASB in cell types
CD14+ monocytes MOLT-4 (Adult T acute lymphoblastic leukemia) 22RV1 (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN STAT1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.53 1.01 0.940.02 1.00 0.16 Weak Concordant
STAT1_HUMAN 2.17 -0.01 0.021.00 1.75 n/a No Hit
ANDR_HUMAN 2.49 -4.19 0.041.00 2.25 n/a No Hit
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Liver,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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