rs2274458 chr6:33711819 A>C
- Sequence
gggcatgcgcgactttgtaggcgc[A/C]ccgctactctccgtgtaggggcgc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) THP-1 (acute monocytic leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN NRF1_HUMAN BRD2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.19 | 0.29 | 1.55 | n/a | No Hit | |||
| RAD21_HUMAN | 1.19 | 0.40 | 1.66 | n/a | n/a | |||
| NRF1_HUMAN | 1.90 | 0.34 | 2.34 | n/a | No Hit | |||
| BRD2_HUMAN | -0.96 | 1.36 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood