rs2276542 chr1:183186264 A>G

Sequence
cacctgatcaaggaaaaggaaggc[A/G]cagcggagcgcagagtgagaacca
ASB in cell types
breast tumor foreskin keratinocyte GM23338
ASB for transcription factors
ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 2.73 n/a 8.6·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  bipolar disorder,  hdl cholesterol,  height
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis

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