rs2277250 chr10:123008776 G>A
- Sequence
gccgtcttcgtcaccgtcacagtc[G/A]ccgccgccatctttgttgtgtctc
- ASB in cell types
- MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) SUM159PT (Triple negative breast cancer) GM12878 (female B-cells lymphoblastoid cell line) A549 (lung carcinoma)
- ASB for transcription factors
- JUN_HUMAN STAT1_HUMAN CDN1B_HUMAN ZN687_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 0.46 | 1.19 | 2.16 | n/a | No Hit | |||
| STAT1_HUMAN | 1.84 | -0.02 | 2.00 | n/a | No Hit | |||
| CDN1B_HUMAN | 0.61 | 1.85 | 2.00 | n/a | n/a | |||
| ZN687_HUMAN | -1.82 | 2.33 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood