rs2277518 chr14:89956053 A>G
- Sequence
ggcccgggatcctgctcctggccg[A/G]gtcgcggtgcgcgggctgctgggg
- ASB in cell types
- breast tumor GSC23 (Glioblastoma)
- ASB for transcription factors
- ESR1_HUMAN STAG1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 3.11 | n/a | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | -0.01 | 1.63 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.42 | 0.33 | 1.18 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid