rs2278229 chr5:176361895 T>C

Sequence
atcgcgagacccgccccctcccca[T/C]gcccttcgccgcccagcgagttgt
ASB in cell types
HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes naive IgD+ B cells
ASB for transcription factors
RBM25_HUMAN IRF5_HUMAN TYY1_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBM25_HUMAN n/a 3.67 1.001.4·10-8 1.50 n/a n/a
IRF5_HUMAN n/a 3.40 1.002.2·10-5 1.00 n/a n/a
TYY1_HUMAN 0.40 3.06 0.745.4·10-4 1.50 n/a No Hit
STAT1_HUMAN n/a 2.22 1.008.4·10-3 3.00 n/a No Hit
FOXK2_HUMAN -4.42 2.53 1.000.02 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Nerve_Tibial,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

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