rs2278410 chr19:50025461 G>A
- Sequence
cctgacggcccctgggcttcgcct[G/A]cctgggaactccgtttcccagatg
- ASB in cell types
- adult erythroblasts GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney) K562 (myelogenous leukemia)
- ASB for transcription factors
- HCFC1_HUMAN FOXK2_HUMAN RBM25_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HCFC1_HUMAN | 1.02 | 1.52 | 1.88 | n/a | n/a | |||
| FOXK2_HUMAN | 2.56 | 0.23 | 1.50 | n/a | n/a | |||
| RBM25_HUMAN | n/a | 2.76 | 4.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood