rs2279516 chr5:53560674 G>C

Sequence
tgcctgcagcaagatggcggcggt[G/C]tcaatgtcagtggtactgaggcag
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma) MDA-MB-231 (breast adenocarcinoma) SK-BR-3 (breast adenocarcinoma)
ASB for transcription factors
BRD2_HUMAN TYY1_HUMAN ERR1_HUMAN INT11_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD2_HUMAN 0.08 1.62 1.006.0·10-5 2.00 n/a n/a
TYY1_HUMAN 0.82 1.00 1.004.5·10-4 1.26 n/a No Hit
ERR1_HUMAN -0.81 1.67 1.006.5·10-3 2.00 0.53 Weak Concordant
INT11_HUMAN -0.03 1.55 1.000.04 1.83 n/a n/a
KMT2A_HUMAN -0.07 2.29 1.000.04 1.25 n/a n/a
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Motif analysis

ERR1_HUMAN Weak Concordant
ERR1_HUMAN pic

Genetic associations

GRASP college completion
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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